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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004757
species:
Oryza sativa
miRNA family:
MIRf1372
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCGAGCTTCTCGAAGATGTCG
miRNA*
GCGTGCTTGGCAAGCTCGCCG
mismatches:
3
bulges:
0
View larger
pre-miRNA
GGCCTTGGTGCCCTCGGAGACG
GCGTGCTTGGCAAGCTCGCCG
GGGAGGACGAGGCGGACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTG
TTGTAGCGGGCGAGCTTGGCGGCCTCGGCG
GCGAGCTTCTCGAAGATGTCG
TTGATGAAGGAGTTCATGA
dot-bracket secondary structure
.....(((..((.(((..((((
((((..((((.((((((((((
((((((......(((((....)))))..))))))..(((((..((.(((((((((((
(....))))).))))))).)))))))..))
)))))))).))))..))))))
))..))).))...)))...
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf10144-akr
:
2e-65
microPC
no hits
UniProt
sp|O22582|H2B_GOSHI: 3e-17
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record